Link wakes up, and asks his mother for a boat. She tells him to ask Mr. Buchman, but he should find a sword first. He finds a sword, and asks Mr. Buchman for a boat. He tells Link that he can have it, but it needs a sail. Link finds a sail, and sails to Sapientia Island.
There he meets Vinco, a kid that looks like Link, but wears black. He asks Link what he wants, and Link says that he wants to stop the flood. Vinco tells link that the flood already came, and then realises that Link is the legendary one. He tells Link to find all of the lost pieces of the Time Token, and come back to Sapienta. There is one on Sapienta, one on Vox, one on Virus, and one on Vicius.
Link goes all the way thourgh Mediocris Temple and when he gets out, the land of Sapienta Island has dark clouds all over it. Link dicovers a Pirate ship and gets in it. The captian gives Link the ride he wants, but there is something he must do in return...